PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2460_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 422aa MW: 47853.2 Da PI: 5.2159

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2460_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.8	6.7e-24	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e++snrqvt+skRr gilKKA+ELSvLCd+++ +++fs+tgk cra_locus_2460_iso_5_len_1531_ver_3 10 RLESSSNRQVTYSKRRSGILKKAKELSVLCDIDIVLLMFSPTGK 53 679***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.567	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-31	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.54E-27	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-21	11	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MGRVKLKIRR LESSSNRQVT YSKRRSGILK KAKELSVLCD IDIVLLMFSP TGKPTIFRGA 60 RSNIDEIISK FAQLSPQERA KRKLESLEVL RKTFKKLDHD INIQEYLDAS SPSLEELCSQ 120 ARVLQAQLTE VHKKLSWWSN PEKIEDIDHL RQMENSLRES LNRLREYKFQ NGMNLPVMMD 180 GDKERQPLTT WLASHDNQQL LLAEVPNLIS QGDIECARDQ SLPCCSVHYN TGQETELHNT 240 GRVDNVEFTQ NMSLPNCTGF FGTAKIGETT DIRSMDNLEC PSDPSLQSCS SLLYNGKEPE 300 IDNSSEMDKI TQESAAMDDL SAIACLRLQL GGQQAYYPFS TLTVPEVKKL DVGKEMNFQD 360 NSMSYQIQGN FEVPSSMYGN VQHAWNHPAD ACASNMIDGN SYPQVIVIPI LCDIFQISDW 420 IR

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MGRVKLKIRR LESSSNRQVT YSKRRSGILK KAKELSVLCD IDIVLLMFSP TGKPTIFRGA  60
RSNIDEIISK FAQLSPQERA KRKLESLEVL RKTFKKLDHD INIQEYLDAS SPSLEELCSQ  120
ARVLQAQLTE VHKKLSWWSN PEKIEDIDHL RQMENSLRES LNRLREYKFQ NGMNLPVMMD  180
GDKERQPLTT WLASHDNQQL LLAEVPNLIS QGDIECARDQ SLPCCSVHYN TGQETELHNT  240
GRVDNVEFTQ NMSLPNCTGF FGTAKIGETT DIRSMDNLEC PSDPSLQSCS SLLYNGKEPE  300
IDNSSEMDKI TQESAAMDDL SAIACLRLQL GGQQAYYPFS TLTVPEVKKL DVGKEMNFQD  360
NSMSYQIQGN FEVPSSMYGN VQHAWNHPAD ACASNMIDGN SYPQVIVIPI LCDIFQISDW  420
IR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-15	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-15	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-15	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-15	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027125662.1	0.0	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	2e-75	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A068UUT5	1e-180	A0A068UUT5_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7640	21	24

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]