PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_24682_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 335aa MW: 38237.4 Da PI: 4.8827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_24682_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.6	5.9e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatg 71 lppGfrFhPtdeelv+ yLk+k++g ++el evi+ +d+yk++Pw+Lp k + +++kew+fF++rdkky++g cra_locus_24682_iso_2_len_1443_ver_3 6 LPPGFRFHPTDEELVDXYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDKEWFFFCPRDKKYPNG 77 79**************************.99**********95345566899*********** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nrat+sgyWkatgkd++v++ +++l+g +ktLvfy+grap g +tdWvmheyrl cra_locus_24682_iso_2_len_1443_ver_3 78 SRTNRATRSGYWKATGKDRKVVC-QSALIGFRKTLVFYRGRAPLGDRTDWVMHEYRL 133 *******************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-62	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.018	6	156	IPR003441	NAC domain
Pfam	PF02365	5.2E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGGASLPPGF RFHPTDEELV DXYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DKEWFFFCPR DKKYPNGSRT NRATRSGYWK ATGKDRKVVC QSALIGFRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDVSQG IPVFQGPFAL CRVIKKNEQK MRDVQGEATF KPVGSSSQTA 180 NVASVEPIVI TDDNPIQASY ICNESNHSTP MTSPYQPTTM GDYDQPSMGT NNPPSLFVSP 240 DMILDSSKDY AQPRGLHPEY GFQNSMWQSS YDQFEISPTS SNSNLQEEAE PSDDFSRYGC 300 MSPYSVYGSY MGYYGNDMLY EGYDQTNSLR NQQPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	5	157	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	5	157	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	5	157	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	5	157	16	166	NO APICAL MERISTEM PROTEIN
4dul_A	3e-53	5	157	16	166	NAC domain-containing protein 19
4dul_B	3e-53	5	157	16	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027080423.1	1e-176	NAC domain-containing protein 71-like
Refseq	XP_027183320.1	1e-176	NAC domain-containing protein 71-like
Swissprot	O49697	3e-94	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A068UZB9	1e-175	A0A068UZB9_COFCA; Uncharacterized protein
STRING	Solyc08g077110.2.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6256	16	35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]