PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_24719_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 174aa    MW: 19573.3 Da    PI: 4.9394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_24719_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY42.51.3e-132491559
                                         -TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY 15 vkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                                         + ++++pr+Y+rCt++   +C+++k+v+  +e+p +  +tY+g+H+++
  cra_locus_24719_iso_1_len_551_ver_3  2 ILNADYPRNYFRCTHKfdqECQATKQVQMIQENPPLYRTTYHGHHTCR 49
                                         66889**********9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007748.7E-16150IPR003657WRKY domain
PROSITE profilePS5081110.613146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-13249IPR003657WRKY domain
PfamPF031061.3E-13249IPR003657WRKY domain
SuperFamilySSF1182903.4E-13249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
XILNADYPRN YFRCTHKFDQ ECQATKQVQM IQENPPLYRT TYHGHHTCRN LHKAPQIILD  60
STTSNDSSSV LLSFNHQSNE TTAFPLVGKQ ETKDEEEVHQ IQRGFFPNQF SDYFLLPPPP  120
PASADLTGAM SSPLSAGSDH GGVYSCTAST HTLEMDHMVV GSVDDFDDVL QFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-132492269OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094837.14e-43probable WRKY transcription factor 70
TrEMBLA0A2R6RRW96e-45A0A2R6RRW9_ACTCH; WRKY transcription factor 70
STRINGPOPTR_0016s14490.15e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143