PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_24943_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 197aa MW: 21504.7 Da PI: 9.8021

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_24943_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.8e-33	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H h+ cra_locus_24943_iso_1_len_850_ver_3 118 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLSKDEGIVVTTYEGMHSHP 176 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-34	103	176	IPR003657	WRKY domain
SuperFamily	SSF118290	9.94E-30	110	177	IPR003657	WRKY domain
PROSITE profile	PS50811	30.125	113	178	IPR003657	WRKY domain
SMART	SM00774	7.3E-39	118	177	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
XLFSSSTLSS MENFSSIFHS SNSSLLNDVV GGGSNGLLGL KMTSSNIIDH MESSSAPISS 60 SDNISNVSQS NGGGFGGGGG GGGGTEAEVK SGKKKVVVDK KVRKPRYAFQ TRSQVDILDD 120 GYRWRKYGQK AVKNNKFPRS YYRCTYQGCN VKKQVQRLSK DEGIVVTTYE GMHSHPIEKS 180 TDNFEHILTQ MQIYTSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	109	175	8	74	Probable WRKY transcription factor 4
2lex_A	2e-28	109	175	8	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004310100.1	1e-71	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A2U9IY41	1e-135	A0A2U9IY41_CATRO; WRKY DNA-binding protein 75
STRING	XP_004310100.1	5e-71	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61