PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_24_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 454aa    MW: 51046 Da    PI: 5.1794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_24_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.28.8e-136854542374
                               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 
                                        ++ L+ cA+a+++g+ ++a+++++ l++ +s +gdp +R+aay++eALaar+a s+++lykal+++e +   s ++
  cra_locus_24_iso_2_len_1599_ver_3  85 KQMLFGCATAIQEGNISEASTMINMLRQKVSIQGDPSERIAAYMVEALAARMAISGKGLYKALKCKEPP---SYDR 157
                                        689*****************************************************************9...9*** PP

                               GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153
                                        laa+++++ev+P+++f++++aN aIlea++ge+rvHi+Dfdi+qG Q+ +Llq+La  p +p +lR+Tgv++pes+
  cra_locus_24_iso_2_len_1599_ver_3 158 LAAMQVLFEVCPCFRFGFMAANGAILEAFKGEKRVHIVDFDINQGSQYYTLLQTLARLPYKPTHLRLTGVDDPESV 233
                                        **************************************************************************99 PP

                               GRAS 154 ..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                                              l+++g+rL+ +A  l++pfef + va +++d+++ +L +kpg+al+Vn+++qlh+++desvs+ ++rd++
  cra_locus_24_iso_2_len_1599_ver_3 234 qrAVGGLKNIGQRLETLAGDLEIPFEFCA-VAAKTADVTPAMLGCKPGDALIVNFAFQLHHMPDESVSTVNQRDRL 308
                                        878889***********************.7999****************************************** PP

                               GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                                        L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+fdsl+a+l+r+s+er++vEr++l+r+i n++aceg+
  cra_locus_24_iso_2_len_1599_ver_3 309 LRMVKSLNPKLVTVVEQDVNTNTAPFLPRFAEAYSYYSAVFDSLDATLSRDSQERMNVERQCLARDIINIIACEGE 384
                                        **************************************************************************** PP

                               GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                        +r+er e ++kWr+r+++aGF++ p+s+++ ++++ l+++++++ y+v+ee g l +gW+++ L+++SaWr
  cra_locus_24_iso_2_len_1599_ver_3 385 DRIERYEVAGKWRARMMMAGFSSSPISQSVKDEIRKLIKQYSER-YKVKEETGGLHFGWEEKILIVASAWR 454
                                        ******************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.73458435IPR005202Transcription factor GRAS
PfamPF035143.0E-13385454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
XMDCDQDKVR LKLEELEREL FDDNNVSEEE MYCHDHSTET DCEWPCPTKD LMLHESPKET  60
SSSDSNVSSI SSNKEASMTA PRTAKQMLFG CATAIQEGNI SEASTMINML RQKVSIQGDP  120
SERIAAYMVE ALAARMAISG KGLYKALKCK EPPSYDRLAA MQVLFEVCPC FRFGFMAANG  180
AILEAFKGEK RVHIVDFDIN QGSQYYTLLQ TLARLPYKPT HLRLTGVDDP ESVQRAVGGL  240
KNIGQRLETL AGDLEIPFEF CAVAAKTADV TPAMLGCKPG DALIVNFAFQ LHHMPDESVS  300
TVNQRDRLLR MVKSLNPKLV TVVEQDVNTN TAPFLPRFAE AYSYYSAVFD SLDATLSRDS  360
QERMNVERQC LARDIINIIA CEGEDRIERY EVAGKWRARM MMAGFSSSPI SQSVKDEIRK  420
LIKQYSERYK VKEETGGLHF GWEEKILIVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-649145325377Protein SCARECROW
5b3h_D3e-649145325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091450.10.0scarecrow-like protein 1
RefseqXP_027091451.10.0scarecrow-like protein 1
RefseqXP_027091452.10.0scarecrow-like protein 1
RefseqXP_027091453.10.0scarecrow-like protein 1
RefseqXP_027091454.10.0scarecrow-like protein 1
RefseqXP_027091455.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A068UU850.0A0A068UU85_COFCA; Uncharacterized protein
STRINGXP_009766061.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]