PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2539_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 252aa    MW: 26552.9 Da    PI: 10.1985
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2539_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10219243126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC +fa+ G C + +rC+FaHg
  cra_locus_2539_iso_1_len_1119_ver_3 219 YKTKLCENFAK-GSCTFAERCHFAHG 243
                                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547911.46E-15121196IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.4E-17125194IPR004088K Homology domain, type 1
SMARTSM003221.4E-12125195IPR004087K Homology domain
PROSITE profilePS5008414.403126190IPR004088K Homology domain, type 1
CDDcd001054.96E-15128190No hitNo description
PfamPF000136.4E-12128192IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.0E-16216249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-8217248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817218245IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6218244IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7219243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEFEGGRKRG RFDSGALNGN GHGRFKQHKQ ALLGVSLVSN ATFCXYVPGG IKAVTQMLGS  60
NPAIPAAPRN PVVQPSFPDG SSPPAVKTRL CNKYNSAEGP MPGRFGGRME PTPPSFGSAA  120
GSFGASATAK ISVDASLAGA IIGKGGVNSK QICRLTGAKL AIRDHESDPN LRNIELEGTF  180
DQIKQASQMV RELIVNVSAA SGPLMKKSAM SNSAPANNYK TKLCENFAKG SCTFAERCHF  240
AHGAEELRKQ EP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022866288.11e-114zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-70C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068VA911e-110A0A068VA91_COFCA; Uncharacterized protein
STRINGcassava4.1_012715m1e-104(Manihot esculenta)