PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2539_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 225aa    MW: 23668.9 Da    PI: 9.1038
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2539_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-10192216126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC +fa+ G C + +rC+FaHg
  cra_locus_2539_iso_3_len_1979_ver_3 192 YKTKLCENFAK-GSCTFAERCHFAHG 216
                                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.592121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.17E-1594169IPR004088K Homology domain, type 1
SMARTSM003221.4E-1298168IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.0E-1798167IPR004088K Homology domain, type 1
PROSITE profilePS5008414.40399163IPR004088K Homology domain, type 1
PfamPF000135.2E-12101165IPR004088K Homology domain, type 1
CDDcd001054.05E-15101163No hitNo description
Gene3DG3DSA:4.10.1000.105.9E-16189222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8190221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817191218IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6191217IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
IGYSTSGCQF GEQCHFLHYV PGGIKAVTQM LGSNPAIPAA PRNPVVQPSF PDGSSPPAVK  60
TRLCNKYNSA EGPMPGRFGG RMEPTPPSFG SAAGSFGASA TAKISVDASL AGAIIGKGGV  120
NSKQICRLTG AKLAIRDHES DPNLRNIELE GTFDQIKQAS QMVRELIVNV SAASGPLMKK  180
SAMSNSAPAN NYKTKLCENF AKGSCTFAER CHFAHGAEEL RKQEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089825.11e-122zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-80C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068VA911e-122A0A068VA91_COFCA; Uncharacterized protein
STRINGcassava4.1_012715m1e-111(Manihot esculenta)