PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2539_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 273aa    MW: 29825.2 Da    PI: 9.3748
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2539_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-0681102627
                                          -SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                          C+ +     Ck+Gd+C+FaHg+
  cra_locus_2539_iso_4_len_1183_ver_3  81 CNKYNSAEGCKFGDKCHFAHGE 102
                                          555555557***********96 PP
2zf-CCCH322.1e-10240264126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC +fa+ G C + +rC+FaHg
  cra_locus_2539_iso_4_len_1183_ver_3 240 YKTKLCENFAK-GSCTFAERCHFAHG 264
                                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.39426103IPR000571Zinc finger, CCCH-type
SMARTSM003560.6275102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-578106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-981107IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-15142217IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.4E-17146215IPR004088K Homology domain, type 1
SMARTSM003221.4E-12146216IPR004087K Homology domain
PROSITE profilePS5008414.403147211IPR004088K Homology domain, type 1
PfamPF000137.4E-12149213IPR004088K Homology domain, type 1
CDDcd001056.48E-15149211No hitNo description
Gene3DG3DSA:4.10.1000.107.9E-16237270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8238269IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6239265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817239266IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7240264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFEGGRKRG RFDSGALNGN GHGRFKQHKQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX CNKYNSAEGC KFGDKCHFAH GEWELGKPTL PSHDDPRAAG  120
PMPGRFGGRM EPTPPSFGSA AGSFGASATA KISVDASLAG AIIGKGGVNS KQICRLTGAK  180
LAIRDHESDP NLRNIELEGT FDQIKQASQM VRELIVNVSA ASGPLMKKSA MSNSAPANNY  240
KTKLCENFAK GSCTFAERCH FAHGAEELRK QEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.11e-115zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-76C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A166GUT21e-110A0A166GUT2_DAUCS; Uncharacterized protein
STRINGcassava4.1_012715m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498