PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2539_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 272aa    MW: 28927.8 Da    PI: 9.8893
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2539_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-064265225
                                         -S---SGGGGTS--TTTTT-SS-S CS
                              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                         k ++C  f+ t  C++G++C+F H
  cra_locus_2539_iso_5_len_1180_ver_3 42 KSKPCTKFFSTSGCQFGEQCHFLH 65
                                         7789******************** PP
2zf-CCCH322.1e-10239263126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          ykt+lC +fa+ G C + +rC+FaHg
  cra_locus_2539_iso_5_len_1180_ver_3 239 YKTKLCENFAK-GSCTFAERCHFAHG 263
                                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0894068IPR000571Zinc finger, CCCH-type
SMARTSM003560.574067IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-54166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-64265IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-44265IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-15141216IPR004088K Homology domain, type 1
SMARTSM003221.4E-12145215IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.4E-17145214IPR004088K Homology domain, type 1
PROSITE profilePS5008414.403146210IPR004088K Homology domain, type 1
PfamPF000137.3E-12148212IPR004088K Homology domain, type 1
CDDcd001057.45E-15148210No hitNo description
Gene3DG3DSA:4.10.1000.107.8E-16236269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8237268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817238265IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6238264IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7239263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEFEGGRKRG RFDSGALNGN GHGRFKQHKQ EMETFSTGIG SKSKPCTKFF STSGCQFGEQ  60
CHFLHYVPGG IKAVTQMLGS NPAIPAAPRN PVVQPSFPDG SSPPAVKTRL CNKYNSAEGP  120
MPGRFGGRME PTPPSFGSAA GSFGASATAK ISVDASLAGA IIGKGGVNSK QICRLTGAKL  180
AIRDHESDPN LRNIELEGTF DQIKQASQMV RELIVNVSAA SGPLMKKSAM SNSAPANNYK  240
TKLCENFAKG SCTFAERCHF AHGAEELRKQ EP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022866288.11e-142zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068VA911e-140A0A068VA91_COFCA; Uncharacterized protein
STRINGcassava4.1_012715m1e-133(Manihot esculenta)