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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_2560_iso_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 260aa MW: 29133.7 Da PI: 7.0198 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 105.4 | 3.4e-33 | 20 | 74 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprl+Wt+eLH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
cra_locus_2560_iso_1_len_943_ver_3 20 KPRLKWTQELHQRFVDAVNQLGGADKATPKSLMRVMGIHGLTLYHLKSHLQKYRL 74
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.917 | 17 | 77 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.9E-31 | 18 | 76 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.25E-16 | 19 | 75 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.2E-23 | 20 | 75 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 8.9E-9 | 22 | 73 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 260 aa Download sequence Send to blast |
MTLQNLQNKD MNLVLSSDAK PRLKWTQELH QRFVDAVNQL GGADKATPKS LMRVMGIHGL 60 TLYHLKSHLQ KYRLGKSQQS QTYSEPKQEE LSQLVTMVDM GCCQNSSLSA LTDTDQENPI 120 LKHIENKQQQ FRSNGCSLES SLTSSDQSSG LKELAETRCG NDENENWTRQ SVVLSLMEMQ 180 PGQKNGERKR MAAISAKQQP SAKRFQSQKS AADDDDQGER KFGFLETIDL NSKCIVSDFD 240 SGTKIIDLNS KGVEQPNGYI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 8e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 9e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A175YIC3 | 4e-50 | A0A175YIC3_DAUCS; Uncharacterized protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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