PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_25847_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 132aa MW: 15232.6 Da PI: 9.7896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_25847_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	27	78	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+R +++N+ ++ Lr l+P + + K + a+i+ A++Y+k+L+ cra_locus_25847_iso_1_len_393_ver_3 27 QRMTHIAVERNRGKQMNEYLSMLRGLMPDN---YVLKGDQASIVGGAINYVKQLE 78 79**************************...9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.57E-11	25	82	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-12	25	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-16	26	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.043	26	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-9	27	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-8	32	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
XDAATSARSR RRRRSKIKRN QEEIENQRMT HIAVERNRGK QMNEYLSMLR GLMPDNYVLK 60 GDQASIVGGA INYVKQLEQR LQFLCSITHH LNETNESAAS SSSYNSPFSE FFIFPQYSTI 120 GLIMNNNDQS FX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	18	RRSKIKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028059913.1	2e-44	transcription factor bHLH94-like
Swissprot	Q9SK91	2e-36	BH094_ARATH; Transcription factor bHLH94
TrEMBL	A0A1R3JWF1	7e-43	A0A1R3JWF1_9ROSI; Uncharacterized protein
STRING	XP_007144754.1	2e-43	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1996	24	62

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]