PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2592_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 213aa MW: 23208.7 Da PI: 9.2909

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2592_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2e-13	69	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l +v+++G+g Wk I r + R+ ++k++w+++ cra_locus_2592_iso_5_len_1372_ver_3 69 KQKWTSEEEEALRAGVRKHGTGKWKNIQRDPEfshllNSRSNIDLKDKWRNL 120 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.208	64	125	IPR017930	Myb domain
SuperFamily	SSF46689	2.44E-16	66	122	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-15	67	121	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-8	68	123	IPR001005	SANT/Myb domain
CDD	cd11660	4.16E-21	70	121	No hit	No description
Pfam	PF13921	3.3E-9	72	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
XGRGGNYKNE LEPTQTNAFA WTLLCDTKPS EERSRVLSFN GGSGRNCSGD FLSAGFRSVF 60 DRRDMGNPKQ KWTSEEEEAL RAGVRKHGTG KWKNIQRDPE FSHLLNSRSN IDLKDKWRNL 120 TVSASNGTGS RDKSKGQKLK LLTDAPAAPL PSSQTALTPS IPISHDVSVD IADDGSKGSD 180 AKAASRXXXX XXXCVLWNHS VTVESSNGPG LID

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00652	PBM	Transfer from LOC_Os01g51154	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175881.1	3e-52	single myb histone 4-like
TrEMBL	A0A068U3Q4	1e-50	A0A068U3Q4_COFCA; Uncharacterized protein
STRING	XP_009757029.1	5e-44	(Nicotiana sylvestris)