PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2595_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 249aa    MW: 29059.5 Da    PI: 10.0967
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2595_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1362.3e-1165142391
                                 FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 
                                          Y++Y+k+ GFsv+k+  +k    +  + +t  C ++ k+++ k++          +r++C a++   ++++g w
  cra_locus_2595_iso_5_len_1664_ver_3  65 YQAYSKSKGFSVTKKFDSKG-SGHFRKXQTISCDRYRKASTYKQS----------KRIKCPARICEILRDNGMW 127
                                          99***********9987776.4555678899****9998886655..........9*********99999**** PP

                                 FAR1  77 evtkleleHnHelap 91 
                                          +v+k++++HnHel p
  cra_locus_2595_iso_5_len_1664_ver_3 128 QVSKVVEQHNHELHP 142
                                          ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-865142IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010189Biological Processvitamin E biosynthetic process
GO:0032259Biological Processmethylation
GO:0051741Molecular Function2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MXENYISESG GELMLNNGSD KEGKLRERSD DAEKLQEPRC QDTEQVLPIS LGKYFNNINE  60
FFYSYQAYSK SKGFSVTKKF DSKGSGHFRK XQTISCDRYR KASTYKQSKR IKCPARICEI  120
LRDNGMWQVS KVVEQHNHEL HPPMSRFMLP HRSLSSNMKR KLEMHDTAGL RYSENVRILE  180
VQAGGSDKLV CLPRDCKNYV XNVRRLNIRV GNADCIDRIF IRMHQKNSNF FHLIPARTEL  240
WVARAPKKF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672394.12e-68protein FAR1-RELATED SEQUENCE 5-like