PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_26008_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 259aa    MW: 27480.5 Da    PI: 9.3826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_26008_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-202373256
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                         +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  cra_locus_26008_iso_1_len_979_ver_3 23 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 73
                                         69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-222381IPR016177DNA-binding domain
PfamPF008475.4E-142372IPR001471AP2/ERF domain
CDDcd000181.61E-182380No hitNo description
SMARTSM003801.6E-382386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-322380IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942380IPR001471AP2/ERF domain
PRINTSPR003675.6E-112435IPR001471AP2/ERF domain
PRINTSPR003675.6E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPRDKSAVG GGAGAASGVK EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA  60
RAYDAAAREF RGAKAKTNFP LPAEEGDMNR NTLNLPNPFA NQINTNNKIN FNHSSPSQSS  120
TVESSSRETI SPAVVVADSS PSLLDLNLGG GAVRFPYPNQ QHHQFRLAQL AAGGFPGGMR  180
PQMYYMDAIA AHGLMNLPGQ QRHANPERVK VAAVDFLSGS GGSGGGVQSD SDSSSVVLDL  240
NRGDVSLNLD LNLPPPASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212087270ATERF1
3gcc_A1e-212087270ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022861038.13e-64ethylene-responsive transcription factor 4-like
TrEMBLA1E0X91e-56A1E0X9_SOLTU; Ethylene response factor 3
STRINGSolyc10g009110.1.15e-57(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165