PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2614_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 329aa MW: 37596.4 Da PI: 6.6821

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2614_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.4	2.2e-56	9	135	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL +kv ++++++ +i evd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+ cra_locus_2614_iso_7_len_1233_ver_3 9 LPPGFRFHPTDEELITHYLSPKVLDNSFSA-IAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCVKDRKYPTGLRT 81 79***********************999.88***********888999**************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat++gyWkatgkdke+++ ++lvg+kktLvfy+grapkgekt+Wvmheyrle cra_locus_2614_iso_7_len_1233_ver_3 82 NRATDAGYWKATGKDKEIFK-VKSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 135 ****************.8889**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-60	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	55.786	9	158	IPR003441	NAC domain
Pfam	PF02365	6.4E-30	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MERDEKMDLP PGFRFHPTDE ELITHYLSPK VLDNSFSAIA IGEVDLNKVE PWDLPWKAKM 60 GEKEWYFFCV KDRKYPTGLR TNRATDAGYW KATGKDKEIF KVKSLVGMKK TLVFYRGRAP 120 KGEKTNWVMH EYRLEGQNSI HNLSKVAKNE WVMRIFKKST GGKKVHISGL IKMNNYGDQE 180 DLGTSNLPPL MDLSSEETQP RTTTTIAEAS HVTCFSNQME DGQKPQMPAS SILSSQIMPY 240 LESMQFGDSI SMDDHSIMRL LMDENGGNSR QNPNANNNQE FSQETGISTD ISSPVSNRVE 300 WRRPSYGHHQ EFHQISSAGP VDLDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-52	6	164	17	174	NAC domain-containing protein 19
3swm_B	1e-52	6	164	17	174	NAC domain-containing protein 19
3swm_C	1e-52	6	164	17	174	NAC domain-containing protein 19
3swm_D	1e-52	6	164	17	174	NAC domain-containing protein 19
3swp_A	1e-52	6	164	17	174	NAC domain-containing protein 19
3swp_B	1e-52	6	164	17	174	NAC domain-containing protein 19
3swp_C	1e-52	6	164	17	174	NAC domain-containing protein 19
3swp_D	1e-52	6	164	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027152794.1	1e-149	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-121	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A068U1T7	1e-145	A0A068U1T7_COFCA; Uncharacterized protein
STRING	VIT_14s0108g01070.t01	1e-136	(Vitis vinifera)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]