PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2619_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 690aa    MW: 76663.3 Da    PI: 6.3019
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2619_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.2e-181422222198
                                          HH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                                   B3  21 kfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                          k+a+e+     + ++  +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +  +
  cra_locus_2619_iso_3_len_3079_ver_3 142 KHANEClppldMTQPVPTQELVAKDLHGIEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGAN 213
                                          44444466666333444568************************************************..3489 PP

                                          E..EEEEE- CS
                                   B3  90 felvvkvfr 98 
                                          +el+v+v+r
  cra_locus_2619_iso_3_len_3079_ver_3 214 GELRVGVRR 222
                                          999****98 PP
2Auxin_resp103.23.1e-34248327183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrW 74 
                                          a+ha+st++ F v+Y+Pr+  s+F++ ++k+++++++ + vGmRfkm+fe+ed +err++Gt+vgv+d++p +W
  cra_locus_2619_iso_3_len_3079_ver_3 248 ASHAVSTGTLFVVYYKPRT--SQFIIGLNKYLESINHGFGVGMRFKMQFEGEDTPERRFTGTIVGVEDMSP-QW 318
                                          789***************6..9*************************************************.** PP

                           Auxin_resp  75 pnSkWrsLk 83 
                                          ++SkWrsLk
  cra_locus_2619_iso_3_len_3079_ver_3 319 EKSKWRSLK 327
                                          *******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-31119251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-33121237IPR015300DNA-binding pseudobarrel domain
CDDcd100178.27E-18127222No hitNo description
SMARTSM010191.3E-15129224IPR003340B3 DNA binding domain
PfamPF023622.8E-16142222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152161224IPR003340B3 DNA binding domain
PfamPF065071.9E-31248327IPR010525Auxin response factor
PfamPF023093.6E-7558614IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-13572654No hitNo description
PROSITE profilePS5174525.71578659IPR000270PB1 domain
PfamPF023091.9E-5624661IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MANSRGSFPQ QQHTNVLAEG PDDLYTELWK ACAGPLVDVP KVRERVYYFP QGHMEQLEAS  60
TNQELNQRIP MFNLSSKILC SVVDIQLLAE KETDEVYAQI TLIPEQDQTE PKSSDSYPSE  120
PPRPTVHSFC KVLTASDQAL RKHANECLPP LDMTQPVPTQ ELVAKDLHGI EWHFKHIFRG  180
QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GANGELRVGV RRVDRQQSQM PSSVISSHSM  240
HLGVLATASH AVSTGTLFVV YYKPRTSQFI IGLNKYLESI NHGFGVGMRF KMQFEGEDTP  300
ERRFTGTIVG VEDMSPQWEK SKWRSLKVQW DEPASIPRPE RVSPWEIEPF VAAIPTSVVP  360
SGAGKNKRLR SHIESPLAET VSSPVSAVWN PSQDSTLVNG TPDGLRSQNI SLHPSHIDIS  420
ANPISGSRSC NIRTHTEGDW LSPSHVNSSL SMFTDETETK STLGWSTFSG TSATPPAKAS  480
DNSTSHLRDG WKPDATVATC RLFGIDLRSP SAGAPGEREP LKPIITQDCA TKECSLTTLS  540
ASDSERKSDL SKDSKDQMLG QPPLPSKEVQ SKQNCSTRSR TKVQMQGVAV GRAVDLTNLK  600
GYDELMCELE EMFEIKGELR PRNKWEIVFT DDEGDMMLMG DDPWQEFCSM VRRIFICSSH  660
DVKKMRAGSK LPLPSTDNDG TAFSSETGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1652235017355Auxin response factor 1
4ldw_A1e-1652235017355Auxin response factor 1
4ldw_B1e-1652235017355Auxin response factor 1
4ldx_A1e-1652235017355Auxin response factor 1
4ldx_B1e-1652235017355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081169.10.0auxin response factor 9-like isoform X1
RefseqXP_027182958.10.0auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A068UX670.0A0A068UX67_COFCA; Auxin response factor
STRINGVIT_02s0025g01740.t010.0(Vitis vinifera)