PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2619_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 538aa    MW: 59540.1 Da    PI: 7.0572
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2619_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-187703398
                                         -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                   B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                         +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +  ++el+v+v+r
  cra_locus_2619_iso_5_len_3260_ver_3  7 TQELVAKDLHGIEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGANGELRVGVRR 70
                                         358999*********************************************..3489999****98 PP
2Auxin_resp103.72.2e-3496175183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrW 74 
                                          a+ha+st++ F v+Y+Pr+  s+F++ ++k+++++++ + vGmRfkm+fe+ed +err++Gt+vgv+d++p +W
  cra_locus_2619_iso_5_len_3260_ver_3  96 ASHAVSTGTLFVVYYKPRT--SQFIIGLNKYLESINHGFGVGMRFKMQFEGEDTPERRFTGTIVGVEDMSP-QW 166
                                          789***************6..9*************************************************.** PP

                           Auxin_resp  75 pnSkWrsLk 83 
                                          ++SkWrsLk
  cra_locus_2619_iso_5_len_3260_ver_3 167 EKSKWRSLK 175
                                          *******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.506172IPR003340B3 DNA binding domain
SMARTSM010190.0011172IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-22399IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-14470No hitNo description
Gene3DG3DSA:2.40.330.101.1E-24585IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-15770IPR003340B3 DNA binding domain
PfamPF065071.3E-3196175IPR010525Auxin response factor
PfamPF023092.5E-7408462IPR033389AUX/IAA domain
SuperFamilySSF542773.63E-13420502No hitNo description
PROSITE profilePS5174525.71426507IPR000270PB1 domain
PfamPF023091.4E-5472509IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTQPVPTQEL VAKDLHGIEW HFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGA  60
NGELRVGVRR VDRQQSQMPS SVISSHSMHL GVLATASHAV STGTLFVVYY KPRTSQFIIG  120
LNKYLESINH GFGVGMRFKM QFEGEDTPER RFTGTIVGVE DMSPQWEKSK WRSLKVQWDE  180
PASIPRPERV SPWEIEPFVA AIPTSVVPSG AGKNKRLRSH IESPLAETVS SPVSAVWNPS  240
QDSTLVNGTP DGLRSQNISL HPSHIDISAN PISGSRSCNI RTHTEGDWLS PSHVNSSLSM  300
FTDETETKST LGWSTFSGTS ATPPAKASDN STSHLRDGWK PDATVATCRL FGIDLRSPSA  360
GAPGEREPLK PIITQDCATK ECSLTTLSAS DSERKSDLSK DSKDQMLGQP PLPSKEVQSK  420
QNCSTRSRTK VQMQGVAVGR AVDLTNLKGY DELMCELEEM FEIKGELRPR NKWEIVFTDD  480
EGDMMLMGDD PWQEFCSMVR RIFICSSHDV KKMRAGSKLP LPSTDNDGTA FSSETGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-971198155355Auxin response factor 1
4ldw_A1e-971198155355Auxin response factor 1
4ldw_B1e-971198155355Auxin response factor 1
4ldx_A1e-971198155355Auxin response factor 1
4ldx_B1e-971198155355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081169.10.0auxin response factor 9-like isoform X1
RefseqXP_027182958.10.0auxin response factor 9 isoform X1
SwissprotQ9XED81e-171ARFI_ARATH; Auxin response factor 9
TrEMBLA0A068UX670.0A0A068UX67_COFCA; Auxin response factor
STRINGVIT_02s0025g01740.t010.0(Vitis vinifera)