PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2625_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 122aa    MW: 13541.4 Da    PI: 4.7714
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2625_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.82.8e-5726119194
                                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatl 74 
                                          vreqdrflPian++rimkk+lPan+ki+k+ak+tvqecvsefisf+tseasdkcqrekrktingddllwa+atl
  cra_locus_2625_iso_4_len_1616_ver_3  26 VREQDRFLPIANIGRIMKKALPANGKIAKEAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 99 
                                          69************************************************************************ PP

                                NF-YB  75 Gfedyveplkvylkkyrele 94 
                                          Gfe+yv+plkvyl++yre+e
  cra_locus_2625_iso_4_len_1616_ver_3 100 GFEEYVDPLKVYLTRYREME 119
                                          *******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5221119IPR009072Histone-fold
SuperFamilySSF471131.13E-3829119IPR009072Histone-fold
PfamPF008081.3E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.2E-217997No hitNo description
PRINTSPR006153.2E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MAEAPPVSPV GGGIESGGDQ SPQSNVREQD RFLPIANIGR IMKKALPANG KIAKEAKDTV  60
QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEEYVDPLKV YLTRYREMEV  120
MT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4726117192Transcription factor HapC (Eurofung)
4g92_B2e-4726117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206013.19e-74nuclear transcription factor Y subunit B-10
SwissprotQ8VYK41e-66NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A251NXN42e-72A0A251NXN4_PRUPE; Uncharacterized protein
TrEMBLA0A314YHZ43e-72A0A314YHZ4_PRUYE; Nuclear transcription factor Y subunit B-10
TrEMBLM5W0F22e-72M5W0F2_PRUPE; Uncharacterized protein
STRINGEMJ072123e-73(Prunus persica)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]