PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2625_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 111aa    MW: 11988.8 Da    PI: 5.8192
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2625_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB86.23.8e-272675150
                               NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtsea 50
                                        vreqdrflPian++rimkk+lPan+ki+k+ak+tvqecvsefisf+tse 
  cra_locus_2625_iso_5_len_946_ver_3 26 VREQDRFLPIANIGRIMKKALPANGKIAKEAKDTVQECVSEFISFITSEC 75
                                        69**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-252174IPR009072Histone-fold
SuperFamilySSF471132.51E-172576IPR009072Histone-fold
PfamPF008084.1E-173275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAEAPPVSPV GGGIESGGDQ SPQSNVREQD RFLPIANIGR IMKKALPANG KIAKEAKDTV  60
QECVSEFISF ITSECVYSLF ALFSSVHCSI ICICFMFSVF RVPTRNDTVG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-212674149Transcription factor HapC (Eurofung)
4g92_B4e-212674149Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028103481.14e-38nuclear transcription factor Y subunit B-1-like
RefseqXP_028122302.17e-38nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK44e-31NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2R6RS651e-35A0A2R6RS65_ACTCH; Nuclear transcription factor Y subunit B-10 like
STRINGEMJ072124e-36(Prunus persica)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]