PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2625_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 94aa    MW: 10318.3 Da    PI: 8.9043
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2625_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB35.32.8e-111287198
                                NF-YB 71 latlGfedyveplkvylkkyrelegekk 98
                                         +atlGfe+yv+plkvyl++yre+eg++k
  cra_locus_2625_iso_6_len_1310_ver_3  1 MATLGFEEYVDPLKVYLTRYREMEGDTK 28
                                         89***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-7146IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MATLGFEEYV DPLKVYLTRY REMEGDTKGS AKGADGSAKR DASQLGHSSQ LAHHGSFTQG  60
MNYGNSQGRG XPVLLIVRSM VYNHELTRIH FGAP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065742.16e-39nuclear transcription factor Y subunit B-10-like isoform X1
RefseqXP_027065743.16e-39nuclear transcription factor Y subunit B-10-like isoform X1
SwissprotQ67XJ24e-26NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A1S3YCJ25e-32A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRINGXP_009620316.19e-33(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]