PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2625_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 162aa    MW: 17615.7 Da    PI: 5.0515
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2625_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.32e-5726122197
                                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatl 74 
                                          vreqdrflPian++rimkk+lPan+ki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atl
  cra_locus_2625_iso_7_len_1088_ver_3  26 VREQDRFLPIANIGRIMKKALPANGKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 
                                          69************************************************************************ PP

                                NF-YB  75 Gfedyveplkvylkkyrelegek 97 
                                          Gfe+yv+plk+yl++yreleg++
  cra_locus_2625_iso_7_len_1088_ver_3 100 GFEEYVDPLKAYLARYRELEGDT 122
                                          ********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5421139IPR009072Histone-fold
SuperFamilySSF471133.42E-4029146IPR009072Histone-fold
PfamPF008081.2E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.8E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.8E-217997No hitNo description
PRINTSPR006158.8E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAEAPPVSPV GGGIESGGDQ SPQSNVREQD RFLPIANIGR IMKKALPANG KIAKEAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLWAMATLG FEEYVDPLKA YLARYRELEG  120
DTRVNSRGGE GSANTIEAHL GPNAEFVRQG SFTHNLSTNS QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4626117192Transcription factor HapC (Eurofung)
4g92_B2e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028103481.11e-88nuclear transcription factor Y subunit B-1-like
RefseqXP_028122302.12e-88nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK43e-69NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1B0T7032e-82A0A1B0T703_CHRMO; NF-Y protein (Fragment)
TrEMBLA0A2U1QNJ12e-82A0A2U1QNJ1_ARTAN; NF-Y protein
STRINGVIT_13s0019g03600.t011e-81(Vitis vinifera)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]