PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2625_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 171aa MW: 18384.3 Da PI: 5.7398

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2625_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	184.2	1e-57	35	131	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatl 74 vreqdrflPian+srimkk+lPan+ki+kd+ketvqecvsefisf+tseasdkcq+ekrktingddllwa+atl cra_locus_2625_iso_9_len_1104_ver_3 35 VREQDRFLPIANISRIMKKALPANGKIAKDSKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 108 69********************************************************************** PP NF-YB 75 Gfedyveplkvylkkyrelegek 97 Gfe+yv+plk+yl++yreleg++ cra_locus_2625_iso_9_len_1104_ver_3 109 GFEEYVDPLKAYLARYRELEGDT 131 ******************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.2E-54	32	148	IPR009072	Histone-fold
SuperFamily	SSF47113	9.16E-40	38	155	IPR009072	Histone-fold
Pfam	PF00808	6.6E-28	41	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.9E-21	69	87	No hit	No description
PROSITE pattern	PS00685	0	72	88	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	9.9E-21	88	106	No hit	No description
PRINTS	PR00615	9.9E-21	107	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MADATQSSSQ GAAAPASSGG GSHESGDQSP RSGGVREQDR FLPIANISRI MKKALPANGK 60 IAKDSKETVQ ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF EEYVDPLKAY 120 LARYRELEGD TRVNSRGGEG SANTIEAHLG PNAEFVRQGS FTHNLSTNSQ I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	5e-47	36	126	3	93	NF-YB
4awl_B	5e-47	36	126	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	5e-47	36	126	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065742.1	4e-87	nuclear transcription factor Y subunit B-10-like isoform X1
Refseq	XP_027065743.1	4e-87	nuclear transcription factor Y subunit B-10-like isoform X1
Refseq	XP_027065745.1	2e-87	nuclear transcription factor Y subunit B-10-like isoform X3
Swissprot	Q67XJ2	1e-71	NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBL	B9IIZ5	8e-84	B9IIZ5_POPTR; Uncharacterized protein
STRING	XP_010667231.1	5e-83	(Beta vulgaris)

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]