PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_26577_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 127aa MW: 14798.5 Da PI: 10.6119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_26577_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.9	2.3e-22	20	110	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 rWtk+e+ +Lie+++ e++ rg+ + +p+W+ vs++++++g++r+p+qC+++w+nl ++kkik cra_locus_26577_iso_4_len_379_ver_3 20 RWTKSETFVLIEGKNIAENQGTRGRssllfgagQPEPKWDFVSSYCKQHGVNREPVQCRKRWSNLICDFKKIKV 93 8******************998667888888************************************* PP trihelix 67 gekkrtsessstcpyfd 83 +e++ + + +s + + + cra_locus_26577_iso_4_len_379_ver_3 94 WESRVKGQGESFWMMRS 110 *99877777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-5	18	87	IPR009057	Homeodomain-like
Pfam	PF13837	3.3E-12	19	108	No hit	No description
PROSITE profile	PS50090	6.62	20	85	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.5E-5	20	85	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
XGGGQQQGTD DKNKLSRHPR WTKSETFVLI EGKNIAENQG TRGRSSLLFG AGQPEPKWDF 60 VSSYCKQHGV NREPVQCRKR WSNLICDFKK IKVWESRVKG QGESFWMMRS DVRRDKKLPG 120 FFDREVF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083005.1	2e-59	trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	2e-52	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A068VMR9	3e-57	A0A068VMR9_COFCA; Uncharacterized protein
STRING	XP_009773262.1	3e-54	(Nicotiana sylvestris)

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]