PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_26578_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 226aa MW: 24229.3 Da PI: 4.9895

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_26578_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.1	5.1e-13	4	52	50	98
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 p++ r+++++sl+yeA+ r+ +P+yG++g++++++++l+q+++e +l + cra_locus_26578_iso_1_len_922_ver_3 4 PQHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGNWHLCQAAVEGVLNG 52 7888*************************************99977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.6E-8	4	47	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
XAGPQHLRPA IFRSLLYEAC GRIVNPIYGS AGLLWSGNWH LCQAAVEGVL NGSPITQISA 60 DSDACTVSPP LKACDIRHVS KDENSSASAA RDLHKVTKTR GKFKRTVAKP KVRAESPDVD 120 DAARVMWSWS HKDEVIGSPS RNSGVSQHVE PENPVGDDDS GSVETVEESV VKAANKKGAD 180 RSDVELELSL GLXACPPKQV EVEINGXDES SCKMDGAGCD WDLIID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027124508.1	2e-96	LOB domain-containing protein 41-like
TrEMBL	A0A068TQW5	3e-93	A0A068TQW5_COFCA; Uncharacterized protein
STRING	XP_009792341.1	3e-74	(Nicotiana sylvestris)