PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2664_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 391aa    MW: 44054.5 Da    PI: 8.8945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2664_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-162468147
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                         r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  cra_locus_2664_iso_1_len_1700_ver_3 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-171874IPR009057Homeodomain-like
PROSITE profilePS5129420.1731973IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-92170IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-172271IPR006447Myb domain, plants
SMARTSM007171.1E-122371IPR001005SANT/Myb domain
PfamPF002491.4E-132467IPR001005SANT/Myb domain
CDDcd001671.13E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDPYSSGEEI VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEALVKG VPIGQALDIE IPPPRPKRKP CNPYPRKISN GRTTCQVGSK  120
DEKSGIPVYS VSQAKHVLDL EKEPTPERNS DERIACAKEN QDENRNSGFV LLSTSPHTCP  180
SSANKSSMPT LAVPRKSCTF KEFVPVINEV VNKDETNESY VTVEPRENQY SAKSDTRQSF  240
PENGICDSMT LAKTHPVNEN LVVGKGQNLD QSKKETELKN DVQNMEGQPR HVPVHILDGS  300
LGMNAANVSF HMSSQQSXVY LKGETNKLTA EGLLTMGKFK VRHTGFKPYK RCSVEAQQQE  360
CSRVVNTSSC QDQEKGPKRI RLEAEASNLI P
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108523.11e-123protein LHY-like
TrEMBLA0A068UJ961e-119A0A068UJ96_COFCA; Uncharacterized protein
STRINGVIT_15s0048g02410.t011e-109(Vitis vinifera)