PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_26911_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 214aa MW: 24585.2 Da PI: 9.8177

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_26911_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	4.9e-56	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL +k+++++++ +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+ cra_locus_26911_iso_1_len_787_ver_3 15 LPPGFRFHPTDEELITYYLINKISDSSFTG-RAVADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRT 87 79***********************999.88***********99999***************** PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat++gyWk+tgkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ cra_locus_26911_iso_1_len_787_ver_3 88 NRATNTGYWKTTGKDKEIYNSvSSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 142 ***************9989999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	13	164	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	15	164	IPR003441	NAC domain
Pfam	PF02365	4.7E-29	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEGDQVNNKG ADETLPPGFR FHPTDEELIT YYLINKISDS SFTGRAVADV DLNKCEPWDL 60 PGKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNTGYWKTTG KDKEIYNSVS SELVGMKKTL 120 VFYRGRAPRG EKTNWVMHEY RIHAKSSYRT TKQDEWVVCR VFQKSAGGKK FPSSNHSRAA 180 ALLNANYNIN IDHHHQINQN SISSSSSSHH HHHX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-59	3	170	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-59	3	170	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-59	3	170	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-59	3	170	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-59	3	170	8	174	NAC domain-containing protein 19
3swm_B	1e-59	3	170	8	174	NAC domain-containing protein 19
3swm_C	1e-59	3	170	8	174	NAC domain-containing protein 19
3swm_D	1e-59	3	170	8	174	NAC domain-containing protein 19
3swp_A	1e-59	3	170	8	174	NAC domain-containing protein 19
3swp_B	1e-59	3	170	8	174	NAC domain-containing protein 19
3swp_C	1e-59	3	170	8	174	NAC domain-containing protein 19
3swp_D	1e-59	3	170	8	174	NAC domain-containing protein 19
4dul_A	1e-59	3	170	5	171	NAC domain-containing protein 19
4dul_B	1e-59	3	170	5	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027080183.1	1e-120	NAC domain-containing protein 92-like isoform X1
Refseq	XP_027121707.1	1e-120	NAC domain-containing protein 92-like isoform X1
Swissprot	Q9FLJ2	2e-84	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A068VET3	1e-118	A0A068VET3_COFCA; Uncharacterized protein
STRING	EOY29157	1e-117	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]