PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_27322_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 303aa MW: 32915.6 Da PI: 9.3674

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_27322_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.6e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s cra_locus_27322_iso_1_len_1003_ver_3 49 KEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSM 109 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	46	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.171	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
XAGGFLVCLF LNYDLFLHVI QENIGGGGAA KPMSAAARGA VERKLRPQKE HALNCPRCNS 60 TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG GTLRNVPVGG GSRKNKRSMN IITSSSSSSS 120 ISTSLHDLNP SKNIHLVHGQ DLNLGFSSLL QDYNNNHGHH VVPQFFELPK SSSNNSSSLL 180 SLQEKQQIAT SPLAALELLR MGIGMNSSNF IPNPTPDLNS IYSTNGFSFQ DLKIGGGGGH 240 IGVQENSETT RTLMFPFGGM KQQVSSGTNT SEVVNHHENI KGQQTSNGSY WNGMLGGAAG 300 GTW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538283.1	2e-72	PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
Refseq	XP_016538284.1	2e-72	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
TrEMBL	A0A068UJL6	5e-75	A0A068UJL6_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419