PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_27388_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 244aa    MW: 26865.1 Da    PI: 6.3072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_27388_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003685107123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           y+C+ C+++Fs+   L  H  +H
  cra_locus_27388_iso_1_len_1003_ver_3  85 YECKTCNRTFSSFQALGGHRASH 107
                                           99**********99999998887 PP
2zf-C2H2140.00014153175123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ++C++Cg  Fs+   L  H+r+H
  cra_locus_27388_iso_1_len_1003_ver_3 153 HECSICGSEFSSGQALGGHMRRH 175
                                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-1384109IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-984107No hitNo description
SMARTSM003550.06385107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-9148175No hitNo description
Gene3DG3DSA:3.30.160.608.5E-4151175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91153180IPR007087Zinc finger, C2H2
PfamPF139121.6E-11153176IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDSMILKSKR NKRLRPPSPP STAVPTSCSA SSSDRSDEDE DMAANCLILL AQGGCGGNSK  60
QLEQEEEDDE IKDMEKISSA KFFVYECKTC NRTFSSFQAL GGHRASHKKP KLPTTAAPPD  120
DHELEEEDGL GQFNILELPN FNKGNNKMSN KIHECSICGS EFSSGQALGG HMRRHRNIST  180
ITKSIESSEK LPPPSPPVRS IFPLDLNLPA PAEDDHGGRE MKFQFSANKQ RLVFSAPALV  240
DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613500.16e-60PREDICTED: zinc finger protein ZAT5-like
RefseqXP_021609938.13e-60zinc finger protein ZAT5-like
SwissprotQ681X46e-49ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A068UEU95e-60A0A068UEU9_COFCA; Uncharacterized protein
STRINGcassava4.1_031586m2e-59(Manihot esculenta)
STRINGXP_009613500.12e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]