PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2744_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 204aa MW: 23591.2 Da PI: 9.0068

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2744_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.9e-17	34	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ cra_locus_2744_iso_3_len_918_ver_3 34 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 79 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-21	14	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-7	16	40	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.464	29	83	IPR017930	Myb domain
SMART	SM00717	1.8E-16	33	81	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	34	78	IPR001005	SANT/Myb domain
CDD	cd00167	2.64E-11	36	79	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-20	41	80	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
FIAKVSGLKV AGDTNNGKSC RLRWVNYLHP GLKRGKMTPH EERLVLELHS KWGNRWSRIA 60 RKLPGRTDNE IKNYWRTHMR KKAQDQRKKA SNNNNNLSPT SSSSLSNCSS SSSNSQGNNS 120 PTVDSVLITE TKDRSFYDTG GFEFDQIEAE KKKNMSNEEE TEELERGPKF YSMDEIWKDI 180 EMSEDDAIKP VNYDYQKMDS PQMW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-17	17	83	39	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	8e-17	17	83	93	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-17	17	83	93	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	4e-17	17	83	62	128	MYB TRANSFORMING PROTEIN
1mse_C	4e-17	17	83	39	105	C-Myb DNA-Binding Domain
1msf_C	4e-17	17	83	39	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108891.1	1e-69	transcription factor MYB59-like
Swissprot	Q9LX82	9e-54	MYB48_ARATH; Transcription factor MYB48
TrEMBL	A0A218XXJ4	1e-67	A0A218XXJ4_PUNGR; Uncharacterized protein
STRING	VIT_06s0004g04140.t01	1e-62	(Vitis vinifera)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]