PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2744_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 209aa    MW: 24280 Da    PI: 9.5056
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2744_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-173984148
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                        rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  cra_locus_2744_iso_6_len_933_ver_3 39 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 84
                                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-201990IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-82045IPR009057Homeodomain-like
PROSITE profilePS5129426.4643488IPR017930Myb domain
SMARTSM007171.8E-163886IPR001005SANT/Myb domain
PfamPF002495.8E-153983IPR001005SANT/Myb domain
CDDcd001674.82E-114184No hitNo description
Gene3DG3DSA:1.10.10.603.1E-204685IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
FIAKVSGLKV AGDTNNRFEK KGKSCRLRWV NYLHPGLKRG KMTPHEERLV LELHSKWGNR  60
WSRIARKLPG RTDNEIKNYW RTHMRKKAQD QRKKASNNNN NLSPTSSSSL SNCSSSSSNS  120
QGNNSPTVDS VLITETKDRS FYDTGGFEFD QIEAEKKKNM SNEEETEELE RGPKFYSMDE  180
IWKDIEMSED DAIKPVNYDY QKMDSPQMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-17228839105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-17228893159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-17228893159MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-17228862128MYB TRANSFORMING PROTEIN
1mse_C4e-17228839105C-Myb DNA-Binding Domain
1msf_C4e-17228839105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108891.15e-69transcription factor MYB59-like
SwissprotQ9LX824e-53MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A218XXJ42e-67A0A218XXJ4_PUNGR; Uncharacterized protein
STRINGVIT_06s0004g04140.t017e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]