PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_27585_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 97aa MW: 11480.3 Da PI: 3.9965

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_27585_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35.5	1.4e-11	7	83	248	322
GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..r.rerhetlekWrer 318 ++ +Fl+ f e+l+ + f++le+++p++s+er ++Ere +r+i +++c + r e e+ +W+er cra_locus_27585_iso_1_len_288_ver_3 7 NSRMDFLKCFKECLRLTTLYFEMLEESFPPTSNERLMLERE-YSRSIIRILSCDDDIvdRdSECWESSVQWSER 79 45779**********************************.89*****9874224145568999*** PP GRAS 319 leea 322 l+ea cra_locus_27585_iso_1_len_288_ver_3 80 LQEA 83 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.0E-9	7	83	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
XEADFCNSRM DFLKCFKECL RLTTLYFEML EESFPPTSNE RLMLEREYSR SIIRILSCDD 60 DIVDRDSECW ESSVQWSERL QEASSLFGYS NDIVDGX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	1e-13	11	95	350	432	Protein SHORT-ROOT
5b3h_B	1e-13	11	95	296	378	Protein SHORT-ROOT
5b3h_E	1e-13	11	95	296	378	Protein SHORT-ROOT
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027117536.1	5e-39	protein SHORT-ROOT-like
TrEMBL	A0A068U5L3	1e-37	A0A068U5L3_COFCA; Uncharacterized protein
STRING	POPTR_0017s05450.1	6e-33	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2031	24	64