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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_2813_iso_2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | LSD | ||||||||
| Protein Properties | Length: 114aa MW: 12375.2 Da PI: 8.331 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 47.1 | 3.9e-15 | 9 | 33 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+t+
cra_locus_2813_iso_2_len_426_ver_3 9 CGGCHTLLMYIRGATSVQCSCCHTI 33
***********************97 PP
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| 2 | zf-LSD1 | 42.4 | 1.1e-13 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lL+Y +GA+sV+Ca+C++V
cra_locus_2813_iso_2_len_426_ver_3 74 CGNCRMLLMYQYGARSVKCAVCNFV 98
***********************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 7.0E-15 | 6 | 35 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 6.6E-13 | 9 | 33 | IPR005735 | Zinc finger, LSD1-type |
| TIGRFAMs | TIGR01053 | 2.0E-12 | 71 | 99 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 6.9E-13 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
| GO:0045595 | Biological Process | regulation of cell differentiation | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 114 aa Download sequence Send to blast |
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTINLAMEGK HENVKIMTFK SINSLKMDHV 60 YXNVAANQVA HVNCGNCRML LMYQYGARSV KCAVCNFVTP VGASGSTTEQ KFNA |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021895584.1 | 2e-49 | protein LOL1 | ||||
| Refseq | XP_021895585.1 | 2e-49 | protein LOL1 | ||||
| Swissprot | Q93ZB1 | 3e-46 | LOL1_ARATH; Protein LOL1 | ||||
| TrEMBL | A0A2G5CN89 | 5e-51 | A0A2G5CN89_AQUCA; Uncharacterized protein | ||||
| STRING | Aquca_044_00148.1 | 8e-52 | (Aquilegia coerulea) | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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