PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2813_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LSD

Protein Properties

Length: 164aa MW: 18062 Da PI: 7.5732

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2813_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.9	9.2e-15	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V cra_locus_2813_iso_3_len_941_ver_3 28 CSGCRNLLMYPVGATSVCCAVCNAV 52 ************************9 PP
2	zf-LSD1	46.3	7.1e-15	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ cra_locus_2813_iso_3_len_941_ver_3 67 CGGCHTLLMYIRGATSVQCSCCHTI 91 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.4E-14	25	55	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-11	28	52	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.3E-14	64	93	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-12	67	91	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MPVPLAPYPS PPVPFTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLAMEXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXFFFFSG RDLDMKIRNN SSFY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024994470.1	2e-59	protein LOL1
TrEMBL	A0A103XQX8	5e-58	A0A103XQX8_CYNCS; Zinc finger, LSD1-type
STRING	VIT_02s0012g00990.t01	2e-57	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67