PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2813_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LSD
Protein Properties Length: 145aa    MW: 15104.7 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2813_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.27.6e-152852125
                             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                        C+gCr+lL+YP GA+sV+Ca+C++V
  cra_locus_2813_iso_4_len_842_ver_3 28 CSGCRNLLMYPVGATSVCCAVCNAV 52
                                        ************************9 PP
2zf-LSD146.55.8e-156791125
                             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                        CggC+tlL+Y rGA+sV+C++C+t+
  cra_locus_2813_iso_4_len_842_ver_3 67 CGGCHTLLMYIRGATSVQCSCCHTI 91
                                        ***********************97 PP
3zf-LSD141.91.7e-13105129125
                             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  cra_locus_2813_iso_4_len_842_ver_3 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.102.4E-423126No hitNo description
TIGRFAMsTIGR010536.0E-142555IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.0E-428126IPR011031Multihaem cytochrome
PfamPF069431.2E-112852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-146493IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-136791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.0E-12102130IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPVPLAPYPS PPVPFTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT PVGASGSTTE QKFNA
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024994470.11e-93protein LOL1
SwissprotQ93ZB11e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A103XQX81e-92A0A103XQX8_CYNCS; Zinc finger, LSD1-type
STRINGVIT_02s0012g00990.t012e-92(Vitis vinifera)
STRINGcassava4.1_018557m2e-92(Manihot esculenta)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]