PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_28442_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 219aa MW: 24401.3 Da PI: 8.9018

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_28442_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.9	1.2e-15	98	186	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 +k +++s+v+ +l+lpk+f++ h ++k+ ++l de+ ++++ k+ + k++ l++GW++F a++L cra_locus_28442_iso_1_len_751_ver_3 98 VKLMLRSHVTGGFWLSLPKQFCDLH-LPKHD-DIVVLVDENDEEYKTKYLIGKNG----LSGGWRGFSIAHNLL 165 68999***************888.44433.489**********666666....9********** PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 egD++vF+ ++ + +v ++r cra_locus_28442_iso_1_len_751_ver_3 166 EGDVIVFQSIK--PCRIKVYIVR 186 ******554..4445777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-18	90	188	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.37E-22	91	188	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.03E-25	95	186	No hit	No description
PROSITE profile	PS50863	11.364	97	188	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-21	97	188	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-13	98	187	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAIPQRSSYE SSSKKKPLEI EKKLLKKKPT IPTCNKIEKE EIDNDKNPTL CYAKKMEKSS 60 AAPGVYGKAK TSASGSASAM DRAIEVQEKL PPEFPSCVKL MLRSHVTGGF WLSLPKQFCD 120 LHLPKHDDIV VLVDENDEEY KTKYLIGKNG LSGGWRGFSI AHNLLEGDVI VFQSIKPCRI 180 KVYIVRANSL SEIDGAISLL SLDFQAKPID YEDVKKVSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	26	KKPLEIEKKLLKK
2	14	27	KKPLEIEKKLLKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027157492.1	1e-85	B3 domain-containing protein Os01g0234100-like
Swissprot	Q10QS9	3e-43	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A068TP84	4e-75	A0A068TP84_COFCA; Uncharacterized protein
STRING	XP_009612763.1	1e-70	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13184	12	19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]