PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_28872_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LBD
Protein Properties Length: 156aa    MW: 17186.3 Da    PI: 6.7412
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_28872_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.37.3e-4561051100
                               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                          +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvy
  cra_locus_28872_iso_1_len_511_ver_3   6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDAVSSLVYEANARMRDPVY 79 
                                          7************************************************************************* PP

                               DUF260  75 Gavgvilklqqqleqlkaelallkee 100
                                          G+vg i+ lq+q++ql+ +la++++e
  cra_locus_28872_iso_1_len_511_ver_3  80 GCVGAISYLQNQVSQLQMQLAVAQAE 105
                                          **********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7665106IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-446103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK VFGASNVSKM LQELPVHQRG  60
DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MQQEQQAETT  120
TTATSYVTTT TTQMELPDEK SLLLSTSNSN FSNLQX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-5121077112LOB family transfactor Ramosa2.1
5ly0_B7e-5121077112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150317.12e-88LOB domain-containing protein 12
SwissprotQ8LBW33e-77LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU33e-86A0A068ULU3_COFCA; Uncharacterized protein
STRINGVIT_06s0004g07200.t016e-83(Vitis vinifera)
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]