PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_28872_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 168aa MW: 18656.7 Da PI: 6.8571

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_28872_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	7.7e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvy cra_locus_28872_iso_2_len_547_ver_3 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDAVSSLVYEANARVRDPVY 79 7*********************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G+vg+i+ lq+q++ql+ +la++++e cra_locus_28872_iso_2_len_547_ver_3 80 GCVGTISYLQNQVSQLQMQLAMAQAE 105 *******************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.88	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK VFGASNVSKM LQELPVHQRG 60 DAVSSLVYEA NARVRDPVYG CVGTISYLQN QVSQLQMQLA MAQAEIFCIQ MQQKQEDHQS 120 SSIANSTPHV DLIEAADDHS FLQNNFPYYN HYLNFASNSS TTSSSSNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	2	107	7	112	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002520780.1	4e-83	LOB domain-containing protein 12
Swissprot	Q8LBW3	4e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2G9I6Q4	1e-82	A0A2G9I6Q4_9LAMI; Uncharacterized protein
STRING	XP_002520780.1	2e-82	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]