PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_290_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 399aa MW: 45847.5 Da PI: 8.8758

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_290_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.5	3.9e-51	69	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lppGfrFhPtd+elv++yL++k++++++++ +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+n cra_locus_290_iso_2_len_1809_ver_3 69 LPPGFRFHPTDDELVTHYLCRKCAAQPISV-PIIAEIDLYKFNPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPN 142 79**************************.88***********6666689**************** PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ra+ +gyWkatg dk++ + + g+kk Lvfy g+apkg kt+W+mheyrl cra_locus_290_iso_2_len_1809_ver_3 143 RAAGTGYWKATGADKPIGK--PKPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 193 *************98..789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-57	66	203	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	69	257	IPR003441	NAC domain
Pfam	PF02365	7.9E-27	70	193	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-57	245	257	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
WPLRPGDPRN FRNSVAAGLS RRKSITVQLL LIRRGEKGSN RKLXLQKGMD YIGYRESIDS 60 GDRNQKLDLP PGFRFHPTDD ELVTHYLCRK CAAQPISVPI IAEIDLYKFN PWDLPGMALY 120 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPIG KPKPLGIKKA LVFYAGKAPK 180 GIKTNWIMHE YRLANVAAPP PAKEPTPGYV MSNFVTTYFX YCRLSSIGSN LTNYGLGLCL 240 CMSMQLDDWV LCRIYNKKGT LEKYNNVDQI QNSIEFQEDK PRIIGFGQSE TARKSNPPPM 300 QPNVQQTRND YLHFETSESV PRLHTDSSGS EQVLSPDFQC EKEVQSAPKW DELERTLDYQ 360 MNFMDSFQND DDPFGSQMQY HQHFSSPFQD VFMYMQKPF

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

WPLRPGDPRN FRNSVAAGLS RRKSITVQLL LIRRGEKGSN RKLXLQKGMD YIGYRESIDS  60
GDRNQKLDLP PGFRFHPTDD ELVTHYLCRK CAAQPISVPI IAEIDLYKFN PWDLPGMALY  120
GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPIG KPKPLGIKKA LVFYAGKAPK  180
GIKTNWIMHE YRLANVAAPP PAKEPTPGYV MSNFVTTYFX YCRLSSIGSN LTNYGLGLCL  240
CMSMQLDDWV LCRIYNKKGT LEKYNNVDQI QNSIEFQEDK PRIIGFGQSE TARKSNPPPM  300
QPNVQQTRND YLHFETSESV PRLHTDSSGS EQVLSPDFQC EKEVQSAPKW DELERTLDYQ  360
MNFMDSFQND DDPFGSQMQY HQHFSSPFQD VFMYMQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-76	62	263	8	174	Stress-induced transcription factor NAC1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073683.1	1e-146	protein ATAF2-like
Swissprot	Q39013	1e-115	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A2U9IY22	0.0	A0A2U9IY22_CATRO; NAC domain containing protein 002
STRING	EOX92686	1e-133	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]