PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_29143_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 126aa MW: 14166.3 Da PI: 7.2733

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_29143_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H cra_locus_29143_iso_1_len_715_ver_3 31 HECPICFKVFSSGQALGGHKRSH 53 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.09E-6	27	54	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-4	28	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.1E-12	30	54	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	31	53	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
XHHQIKKNRI SSSNIVVDDH NGGSNRNNKV HECPICFKVF SSGQALGGHK RSHLIADAKS 60 NQQNTTTTSV KKVSEIRDFL DLNLPPPPPL QPEDEESSDQ AYFNSWWIGS NHSHEQQQQQ 120 QLVGLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027169063.1	2e-30	uncharacterized protein LOC113768782
TrEMBL	A0A068VCX2	6e-28	A0A068VCX2_COFCA; Uncharacterized protein
TrEMBL	A0A1S4DPL0	4e-28	A0A1S4DPL0_TOBAC; zinc finger protein ZAT4-like isoform X2
STRING	XP_009595361.1	1e-28	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4481	22	41