PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2950_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 228aa MW: 25424.2 Da PI: 9.3405

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2950_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.5	3.2e-34	97	154	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+ cra_locus_2950_iso_2_len_1364_ver_3 97 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHH 154 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-35	81	156	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	89	156	IPR003657	WRKY domain
PROSITE profile	PS50811	31.996	91	156	IPR003657	WRKY domain
SMART	SM00774	1.2E-39	96	155	IPR003657	WRKY domain
Pfam	PF03106	4.6E-27	97	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
PPPDPPPTAA AANENSTRTA ISCVSSSSSE AAGGGGGVEL LEDQSSKSNS TTTTKGCEND 60 QDDKSKKLSK LPRKKGEKKQ REPRFAFTTK SEIDHLEDGY RWRKYGQKAV KNSPFPRSYY 120 RCTSQKCSVK KRVERSFQDP SIVITTYEGQ HNHHCPATLR GNAAAMIMSS SSSFPSPGFS 180 HNHHQDLLNI PQIPSPYYQT LNQQQQQLPD HYGLFQNMIP PFMHKQEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-29	89	157	10	78	Probable WRKY transcription factor 4
2lex_A	3e-29	89	157	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00168	DAP	Transfer from AT1G29860	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063441.1	1e-70	WRKY transcription factor 71-like
Swissprot	Q93WV4	2e-54	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A3S3P8Z0	8e-69	A0A3S3P8Z0_9MAGN; Putative WRKY transcription factor 71
STRING	XP_008447132.1	7e-69	(Cucumis melo)

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]