PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_29527_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 198aa MW: 22332.8 Da PI: 9.1713

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_29527_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	2	47	4	48
S-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 W++eEd l+++v+++G+g +W + +++ g++R++k+c++rw++yl cra_locus_29527_iso_1_len_593_ver_3 2 WSPEEDNTLKNYVQKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 47 ********************************************97 PP
2	Myb_DNA-binding	39.9	1e-12	54	96	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ cra_locus_29527_iso_1_len_593_ver_3 54 GGFTEEEDNVILTLYSNIGSR-WSVIASQLQ-GRTDNDVKNYWNT 96 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.885	1	47	IPR017930	Myb domain
SMART	SM00717	3.2E-7	1	49	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	2	47	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.67E-26	2	94	IPR009057	Homeodomain-like
CDD	cd00167	2.43E-9	2	47	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.8E-24	2	54	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.967	48	102	IPR017930	Myb domain
SMART	SM00717	5.2E-11	52	100	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-11	54	96	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-24	55	102	IPR009057	Homeodomain-like
CDD	cd00167	3.40E-8	56	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
XWSPEEDNTL KNYVQKYGTG GNWIALPHKA GLKRCGKSCR LRWLNYLRPD IKHGGFTEEE 60 DNVILTLYSN IGSRWSVIAS QLQGRTDNDV KNYWNTKLKK KLLALAAAAS TNKYSTNFPN 120 NSVDLGPINY TKYYGNSSSI PSISTTFPTY NNVDMMMING YNSSSSSSTA ATDNNQLIVS 180 EMFYNNQENL LPLPRLME

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-24	2	102	10	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019248879.1	4e-68	PREDICTED: transcription factor RAX2-like isoform X1
Swissprot	Q9SJL7	1e-60	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A1J6I9E8	1e-66	A0A1J6I9E8_NICAT; Transcription factor rax2
STRING	XP_009799606.1	1e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]