PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2970_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 90aa MW: 9919.89 Da PI: 4.6714

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2970_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.9	9.4e-15	55	81	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC+yG++C+F+H+p cra_locus_2970_iso_1_len_429_ver_3 55 PGEPDCIYYLRTGTCSYGSQCRFNHPP 81 5799*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.9E-7	54	81	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.037	54	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-12	56	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	59	81	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.4E-6	60	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MKNIDVRENG GSSDSFSSAT GQIDAMKRLQ IKDDGDKNGG AVAEADNSCL FPDRPGEPDC 60 IYYLRTGTCS YGSQCRFNHP PYSPQVFSFW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062401.1	1e-23	zinc finger CCCH domain-containing protein 3-like isoform X1
Refseq	XP_027062402.1	9e-24	zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBL	A0A068UB71	2e-22	A0A068UB71_COFCA; Uncharacterized protein
STRING	XP_010252578.1	4e-18	(Nelumbo nucifera)