PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2970_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 384aa    MW: 41815.3 Da    PI: 8.4094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2970_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.4e-143056127
                                         --S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                         ++++ C +++rtGtC+yG++C+F+H+p
  cra_locus_2970_iso_2_len_1619_ver_3 30 PGEPDCIYYLRTGTCSYGSQCRFNHPP 56
                                         5789*********************97 PP
2zf-CCCH406.4e-137398227
                                         -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                         +++ Crf+++tGtCkyG++C+++H++
  cra_locus_2970_iso_2_len_1619_ver_3 73 GQPDCRFYLKTGTCKYGSTCRYHHPQ 98
                                         6899********************97 PP
3zf-CCCH38.22.4e-12118143227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          ++++C++++rtG Ck+G  CkF H++
  cra_locus_2970_iso_2_len_1619_ver_3 118 DEKPCPYYMRTGMCKFGVLCKFDHPQ 143
                                          5789********************97 PP
4zf-CCCH32.61.3e-10249274227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          ++++Cr+f  tG CkyG  Ck++H++
  cra_locus_2970_iso_2_len_1619_ver_3 249 DQPECRDFVNTGSCKYGLDCKYHHPR 274
                                          689*********************96 PP
5zf-CCCH29.99.8e-10295320227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++ C+ ++ +G CkyG++C++ H++
  cra_locus_2970_iso_2_len_1619_ver_3 295 GQAVCSSYSLYGLCKYGPTCRYDHPM 320
                                          7899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-72956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0372957IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-113156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-53554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4087199IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-77198IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-107398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-676100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-57798IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6115143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455116144IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9118143IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4120142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99247275IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4247274IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6251277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5253274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5293319IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85293321IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7295320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MKRLQIKDDG DKNGGAVAEA DNSCLFPDRP GEPDCIYYLR TGTCSYGSQC RFNHPPYSPQ  60
GFQNSGELPV RDGQPDCRFY LKTGTCKYGS TCRYHHPQDK NSGAPVLLNN LGLPMRKDEK  120
PCPYYMRTGM CKFGVLCKFD HPQAASAGNF VTGLPAYGSS GLAFVPSSAA PYAGGVSEFA  180
IPKTTYASSP SLQVPQPYMP ILLSPSQGWS TYMGTMTPSL VTNVLNHQAS SGTMNLLSAS  240
VSQLPDKPDQ PECRDFVNTG SCKYGLDCKY HHPRDKIPPL AANMLGPLGL PSRPGQAVCS  300
SYSLYGLCKY GPTCRYDHPM AGYFYNHNLG VPSILPDPPF FPYQWSPTSV SLSKMSPSTS  360
SKSSDQPRKD EAAKKKSNNQ TPEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172929.11e-154zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A068UB711e-152A0A068UB71_COFCA; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-147(Vitis vinifera)