PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2970_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 409aa    MW: 44384 Da    PI: 8.2209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2970_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.79.1e-145581127
                                         --S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                         ++++ C +++rtGtC+yG++C+F+H+p
  cra_locus_2970_iso_3_len_1685_ver_3 55 PGEPDCIYYLRTGTCSYGSQCRFNHPP 81
                                         5789*********************97 PP
2zf-CCCH39.96.9e-1398123227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++ Crf+++tGtCkyG++C+++H++
  cra_locus_2970_iso_3_len_1685_ver_3  98 GQPDCRFYLKTGTCKYGSTCRYHHPQ 123
                                          6899********************97 PP
3zf-CCCH38.12.6e-12143168227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          ++++C++++rtG Ck+G  CkF H++
  cra_locus_2970_iso_3_len_1685_ver_3 143 DEKPCPYYMRTGMCKFGVLCKFDHPQ 168
                                          5789********************97 PP
4zf-CCCH32.51.5e-10274299227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          ++++Cr+f  tG CkyG  Ck++H++
  cra_locus_2970_iso_3_len_1685_ver_3 274 DQPECRDFVNTGSCKYGLDCKYHHPR 299
                                          689*********************96 PP
5zf-CCCH29.81.1e-09320345227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++ C+ ++ +G CkyG++C++ H++
  cra_locus_2970_iso_3_len_1685_ver_3 320 GQAVCSSYSLYGLCKYGPTCRYDHPM 345
                                          7899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0375482IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-75481IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-115681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-55981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-56079IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.40896124IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-796123IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-1098123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5102123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6140168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455141169IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9143168IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4145167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99272300IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4272299IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6276302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5278299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.12E-5318344IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85318346IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-7320345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MKNIDVRENG GSSDSFSSAT GQIDAMKRLQ IKDDGDKNGG AVAEADNSCL FPDRPGEPDC  60
IYYLRTGTCS YGSQCRFNHP PYSPQGFQNS GELPVRDGQP DCRFYLKTGT CKYGSTCRYH  120
HPQDKNSGAP VLLNNLGLPM RKDEKPCPYY MRTGMCKFGV LCKFDHPQAA SAGNFVTGLP  180
AYGSSGLAFV PSSAAPYAGG VSEFAIPKTT YASSPSLQVP QPYMPILLSP SQGWSTYMGT  240
MTPSLVTNVL NHQASSGTMN LLSASVSQLP DKPDQPECRD FVNTGSCKYG LDCKYHHPRD  300
KIPPLAANML GPLGLPSRPG QAVCSSYSLY GLCKYGPTCR YDHPMAGYFY NHNLGVPSIL  360
PDPPFFPYQW SPTSVSLSKM SPSTSSKSSD QPRKDEAAKK KSNNQTPEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172929.11e-160zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A068UB711e-158A0A068UB71_COFCA; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016