PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_29873_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 211aa MW: 22900.6 Da PI: 8.6837

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_29873_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.9	1.2e-36	22	121	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 aCa+Ck++rr+Ca++C+lapyfpae+p++f n+hklFG++n+ k+lk++++ +r++a++s++y+A+ara+d v cra_locus_29873_iso_1_len_773_ver_3 22 ACASCKYQRRRCAPGCPLAPYFPAENPQQFTNAHKLFGVRNLAKVLKNMKPPQRDMAIKSMIYQANARANDRVG 95 7*********************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G+++++++l +q+e +ael+ + ++ cra_locus_29873_iso_1_len_773_ver_3 96 GCYRIVQELMKQIELCEAELDIVLQQ 121 *****************9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.472	21	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-36	22	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
GGFSKRSGSV GNGKGISSSS RACASCKYQR RRCAPGCPLA PYFPAENPQQ FTNAHKLFGV 60 RNLAKVLKNM KPPQRDMAIK SMIYQANARA NDRVGGCYRI VQELMKQIEL CEAELDIVLQ 120 QLALYRAEAT ENEIQGFDTT SSTGIGTSNN TNITTTGCVN GENGNGDGIS VDVVLNFNNS 180 IQVSSSSGFH FNSHRHHQNA SVNLEDLPVT R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-29	23	125	12	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-29	23	125	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700669.1	7e-50	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	3e-42	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1U8KIZ9	2e-48	A0A1U8KIZ9_GOSHI; LOB domain-containing protein 22-like
STRING	Gorai.011G064500.1	3e-49	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]