PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_30069_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 303aa MW: 33868 Da PI: 5.7498

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_30069_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.6e-30	139	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp+++++tY+ eH h+ cra_locus_30069_iso_1_len_1105_ver_3 139 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCKDPSIFIVTYTAEHSHS 197 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-31	124	199	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-26	133	199	IPR003657	WRKY domain
PROSITE profile	PS50811	32.248	133	199	IPR003657	WRKY domain
SMART	SM00774	1.0E-34	138	198	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	140	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSGFEDNWGL QAIVGGKSFS SAISALPIPN SSCYSIMDHM SEHRDLANNF PDLFETMFTD 60 DDRLEQLYKP FYPVVSSDSS SESIIQQVEE KLFVEEDEKK SNFCPVESAT TVDYVPKYKR 120 RKNQQKRVVI QVTAEDLSSD KWAWRKYGQK PIKGSPYPRS YYRCSSSKGC LARKQVEQSC 180 KDPSIFIVTY TAEHSHSQPT KKNALAGTVR HKFPNPKTPS KATSSSSKLV AKAKDSSSSV 240 PSPLIPSVEN VKQEMMSIEE DDNNIIFSGV KLDDEFFSGL EDLDELISEL GMGCGSSKLF 300 PTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	127	199	2	74	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00448	DAP	Transfer from AT4G23550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022867110.1	4e-83	WRKY transcription factor 22-like
TrEMBL	K7PDM8	0.0	K7PDM8_CATRO; WRKY22

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35