PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_30222_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 149aa    MW: 16604.7 Da    PI: 10.4352
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_30222_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.52.3e-133382156
                                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                         ++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  cra_locus_30222_iso_2_len_627_ver_3  3 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 38
                                         57899*****************************98 PP
2HD-ZIP_I/II104.21e-332741992
                          HD-ZIP_I/II 19 eeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                                         +e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  cra_locus_30222_iso_2_len_627_ver_3  2 KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 74
                                         6899*****************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.281140IPR001356Homeobox domain
CDDcd000869.95E-8241No hitNo description
Gene3DG3DSA:1.10.10.602.5E-12338IPR009057Homeodomain-like
SuperFamilySSF466892.99E-12349IPR009057Homeodomain-like
PfamPF000468.0E-11338IPR001356Homeobox domain
PROSITE patternPS0002701538IPR017970Homeobox, conserved site
PfamPF021832.1E-114074IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.8E-264083IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
XKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN  60
RRLQKELQEL RALKSSQPFY MQLPPTTLTM CPSCERVASS TAANANANAN ANANAKANAT  120
ATAAATTNTA LSLSKPKPQP QPQHQVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13240RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066527.12e-71homeobox-leucine zipper protein HOX11
SwissprotP466656e-62HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A068URD44e-70A0A068URD4_COFCA; Uncharacterized protein
STRINGXP_010265939.17e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186