PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_30340_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 217aa MW: 23675.2 Da PI: 9.5322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_30340_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	14	60	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ K +Ka+ L ++v+ I++L cra_locus_30340_iso_1_len_826_ver_3 14 KSHSEAERRRRKRINGHLATLRSLLPNT-----IKSDKASLLAEVVRSIREL 60 79***********************8.....69************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.04	11	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.67E-9	14	62	No hit	No description
Pfam	PF00010	6.8E-10	14	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-13	15	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-12	15	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-10	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	1.31E-5	113	184	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-7	114	185	No hit	No description
CDD	cd04873	0.00245	118	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MATAAEAKTI AANKSHSEAE RRRRKRINGH LATLRSLLPN TIKSDKASLL AEVVRSIREL 60 KKTTSELAEN GGDDDDDNDF INMFPSESDE LKLCYIRNDV VGGDSSGSSN SSNTIKATIC 120 CEDRPEIIIE LTRALNSIQT KVVKAEMATV GGRIKAVLWL KMAAAEKVSG EEEGLTKLRR 180 AIKVVIDKSI LLAAPVPIPH AHGHALLGNK RARLYHI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074383.1	6e-86	transcription factor bHLH30-like
TrEMBL	A0A068U1R8	1e-84	A0A068U1R8_COFCA; Uncharacterized protein
STRING	XP_009605433.1	4e-81	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7283	22	31