PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_30366_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 180aa    MW: 21001.6 Da    PI: 9.8178
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_30366_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20357357
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                         k+ ++t++qle Le++F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k+
  cra_locus_30366_iso_1_len_711_ver_3  3 KKKRLTNDQLESLESCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKN 57
                                         56679************************************************95 PP
2HD-ZIP_I/II120.77.5e-39293192
                          HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee 76
                                         ekk+rl+++q+++LE++F+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e
  cra_locus_30366_iso_1_len_711_ver_3  2 EKKKRLTNDQLESLESCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKNKQLERLYDSLKQEFDVVSRE 77
                                         69************************************************************************** PP

                          HD-ZIP_I/II 77 nerLekeveeLreelk 92
                                         +++L++ev +Lr+ lk
  cra_locus_30366_iso_1_len_711_ver_3 78 KQKLQEEVMALRSILK 93
                                         ************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.1E-18162IPR001356Homeobox domain
PROSITE profilePS5007117.767158IPR001356Homeobox domain
SuperFamilySSF466895.99E-19360IPR009057Homeodomain-like
PfamPF000466.8E-18357IPR001356Homeobox domain
CDDcd000865.58E-15359No hitNo description
Gene3DG3DSA:1.10.10.604.1E-22465IPR009057Homeodomain-like
PRINTSPR000314.7E-62938IPR000047Helix-turn-helix motif
PROSITE patternPS0002703356IPR017970Homeobox, conserved site
PRINTSPR000314.7E-63854IPR000047Helix-turn-helix motif
PfamPF021831.1E-75892IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
XEKKKRLTND QLESLESCFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKNKQL  60
ERLYDSLKQE FDVVSREKQK LQEEVMALRS ILKDQVGKNM STTAAAAAXX XXXXXXXQQQ  120
QQQQQMNMNM NMMGQCSSYV FKTNNVNMMN MDQVYNTNAH VMPLYWASAA AAALPSTYPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069703.11e-59putative homeobox-leucine zipper protein ATHB-51
RefseqXP_027173501.11e-59putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR06e-45ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A068V4484e-58A0A068V448_COFCA; Uncharacterized protein
STRINGXP_009758049.12e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]