PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3111_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 293aa    MW: 32929.7 Da    PI: 6.7437
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3111_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.1e-072392722154
                                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  cra_locus_3111_iso_2_len_1166_ver_3 239 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 272
                                          469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-192670IPR005540KNOX1
PfamPF037901.0E-172869IPR005540KNOX1
SMARTSM012561.1E-2381136IPR005541KNOX2
PfamPF037912.4E-1884135IPR005541KNOX2
PROSITE profilePS5007111.71213276IPR001356Homeobox domain
SuperFamilySSF466893.76E-16215280IPR009057Homeodomain-like
SMARTSM003895.6E-11215280IPR001356Homeobox domain
CDDcd000867.73E-12216277No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25220278IPR009057Homeodomain-like
PfamPF059209.8E-18233272IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGSGGGGGIG GLGDVSVAIS SDGQQRFLKA EIATHPLYEQ LLSAHVACLR VATPIDQLPL  60
IDAQLSQSHH IMRSYASLST HPLSPHDRQE LDNFLGQYLL VLCTFKEQLQ QHVRVHAVEA  120
VMACREIEQN LQALTGITLG EGTGATMSDD EDEMQMDFSL DQSGGDGHDL MGFGPLLPTE  180
SERSLMERVR QELKLELKQG FRSRIXGDVR EEILRKRRAG KLPGDTTSVL KNWWQQHSKW  240
PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS VTSLKSKRKR XVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A9e-13216272864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269289RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182589.10.0homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-166KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A068UQE90.0A0A068UQE9_COFCA; Uncharacterized protein
STRINGGorai.003G163800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]